PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G175600.1
Common NameB456_011G175600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 228aa    MW: 25247.1 Da    PI: 7.675
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G175600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000183353323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C +C+  F+++  L  H+ +H
  Gorai.011G175600.1 33 CRICDHIFTSSRALFDHMELH 53
                        ******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDASRNANMR EAVPLLNHAR REQPGSAEEL IACRICDHIF TSSRALFDHM ELHLLLDEAN  60
AKRQLLLSHM VVAPQSGVSA NHLIQNHPPP PPALQQDSQQ QPRLVVPRQR FVRILPYPPL  120
PSAIHPFLIG AGAPQQWTIR PPLVSYQPVV NQPLPTAPTP SPTAAEVAAT AARQIMRMSR  180
SRTNLFTRPF LNQLEANLLI EGMAAMAERE LEGDCVRDQE VDVTLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D2T9J71e-165A0A0D2T9J7_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2483334
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]